EpiTrace

Main

  • About EpiTrace
  • Installation
  • Release Notes
  • Interpreting EpiTrace Age
  • Understanding Bulk vs Single-Cell EpiTrace Age
  • Why the Difference?
  • How EpiTrace Functions Handle This
  • Practical Examples
  • When to Use Transformation
  • Common Pitfalls
  • References
  • Clock Reference Options
  • Available Clock Sets
  • Which Clock Should You Use?
  • Why is solo_WCGW Not Used in Tutorials?
  • When to Consider solo_WCGW
  • Example Comparative Analysis
  • References
  • Known issues and workarounds
  • References

Tutorials

  • Overview of tutorial
  • Most simple example with bulk ATAC
  • Chemical induction of pluripotency
  • Mouse T cell aging in chronic viral infection
  • Single cell age in fly development
  • Hematopoietic cell expansion potential

Functions

  • Init_Peakset
  • Init_Matrix
  • EpiTrace_prepare_object
  • EpiTraceAge
  • RunEpiTraceAge
  • EpiTraceAge_Convergence
  • AssociationOfPeaksToAge
  • RunEpiTracePhylogeny
EpiTrace
  • Search

© Copyright <2024>, Yi Zhang, Euler Technology.

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